PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10197.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 140aa    MW: 16160.8 Da    PI: 10.1272
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10197.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.95.9e-1575131157
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                              eke kr +r+ +NR++A+  R+RKka++ eL ++vk Le+ N++L ++l++ ++e +
  Rsa1.0_10197.1_g00001.1  75 EKETKRLKRLLRNRVSAQQARERKKAYLGELGNRVKYLENRNSELEERLSTSQNENQ 131
                              899*************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000415.4E-57490IPR001630cAMP response element binding (CREB) protein
SMARTSM003383.0E-1375139IPR004827Basic-leucine zipper domain
PfamPF001701.4E-1375133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.72677137IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-1579130No hitNo description
SuperFamilySSF579592.88E-1279134No hitNo description
CDDcd147047.43E-1680131No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PRINTSPR000415.4E-592112IPR001630cAMP response element binding (CREB) protein
PRINTSPR000415.4E-5112129IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSTFTTSDLF RPDYFDASSL PSSSERSSSS APHLDIKEGI ESDEEIRRVP EFGPDQTQIT  60
VRGEGQRKRG RTPAEKETKR LKRLLRNRVS AQQARERKKA YLGELGNRVK YLENRNSELE  120
ERLSTSQNEN QIVRTEFGRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1766791e-92AY176679.1 Brassica rapa subsp. pekinensis HY5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609113.12e-56PREDICTED: transcription factor HY5
RefseqXP_013687403.12e-56PREDICTED: transcription factor HY5-like
SwissprotO246463e-51HY5_ARATH; Transcription factor HY5
TrEMBLA0A078E7S72e-56A0A078E7S7_BRANA; BnaC09g45380D protein
TrEMBLA0A0D3EG972e-56A0A0D3EG97_BRAOL; Uncharacterized protein
STRINGBra008976.1-P1e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.17e-42bZIP family protein